COLI makes available a variety of online tutorial and documentation resources for students, faculty and staff. These enable Canisius users to pick up skills or learn about new applications on their own …

The tutorial contains instructions for using these tools to examine the E. coli O104:H4 outbreak genome. The detection of antimicrobial resistance genes is a key question for many researchers, especially in …

A simplified model of E.coli, referred to as the E.coli core model, is a great model to explore the analysis and exploration tools available through the COBRA toolbox which is the purpose of this tutorial.

This tutorial has walked through how to assemble small to mid-sized genomes using the flye assembler. We have also shown how to improve the accuracy of our assembly using the medaka consensus …

The COLI Guide can also be practically helpful for teaching face-to-face courses. Within the modules, you might see reference to other activities within the Online Faculty Development Course, including …

To illustrate the capabilities % of the COBRA Toolbox [1, 2], this tutorial will focus on exploring the attributes % of the _E.coli_ core model that was developed by Orth, Fleming, and Palsson % [3] and …

Sep 13, 2021 · The pre-built E. coli index included with Bowtie is built from the sequence for strain 536, known to cause urinary tract infections. We will create a new index from the sequence of E. coli …

In this tutorial, we will analyze a movie of growing E. coli cells using some rudimentary image processing and will estimate a doubling time.

Nov 13, 2017 · Transformation is the process by which foreign DNA is introduced into a cell. Transformation of bacteria with plasmids is important not only for studies in bacteria but also …

With better read pairs that link more distant locations in the genome, there are fewer contigs, and contigs are are longer, giving us a more complete picture of linkage across the genome. The …